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Cluster Grids on Sun Hardware

You can use Sun supported or Sun open-source software to implement cluster grids on Sun systems running the Solaris or Linux operating environments.

You gain the following features and benefits that a cluster grid offers:

  • Maximizes resource availability and usage—dynamically aggregates the compute power of all systems in the grid (including individual subsystems such as CPUs, RAM, storage, availability, and so on), providing total available compute power to the grid.

  • Automates resource management—analyzes large numbers of compute jobs and distributes them to the most appropriate resource in the grid, while allowing for configurable job prioritization and scheduling.

  • Transparent user access to available resources.

  • Provides centralized administration—administrators control resource usage through a single centralized interface.

  • Full 64-bit support for the hardware and software processes (Solaris OE only).

  • Support for single-threaded, multi-threaded, and multiprocessor applications

  • Make the most of existing Sun systems in your environment, from thin clients and individual workstations to powerful servers.

  • Scalability because the architecture supports many thousands of processors, with optimized parallel messaging for minimum network load.

  • Low cost implementation—All the components of the cluster grid stack are available at no cost with Sun supplied hardware. Both Sun Grid Engine software and Grid Engine source code are available at no cost. HPC ClusterTools technology source code and SunVTS are also freely available for download. See "Related Resources" on page 16 for details.

Implementing a cluster grid with Sun supported open-source software involves installing the Sun Cluster Grid software stack on one or more systems.

Sun Cluster Grid Software Stack

The Sun Cluster Grid software stack comprises a number of software components:

  • Sun Grid Engine (SGE) software

  • Sun HPC ClusterTools™ software

In a Solaris operating environment, the following tools provide additional features to the cluster grid environment:

  • Solaris JumpStart™ software

  • Solaris™ Flash software

  • Sun™ Management Center (SunMC) software

  • Sun Validation Test Suite (SunVTS™) software

The single essential component of a Sun Cluster Grid is the Sun Grid Engine (SGE) software. Implemented alone, the SGE software delivers job management services for Solaris and Linux environments. The other components of the Sun Cluster Grid stack provide additional functions as shown in FIGURE 2. Brief details are given in this article on the function and architecture of each component.

Figure 2FIGURE 2 Sun Cluster Grid Software Stack

The components are available at no cost, and some are available as open-source software (see "Related Resources" on page 16).

The block diagram in FIGURE 2 shows the different levels of implementation of the Sun Cluster Grid software stack as follows:

  • Left stack—Represents a basic stack, with only the SGE software installed as the DRM.

  • Center stack—Includes the addition of the Sun HPC ClusterTools software component for support of Sun message passing interface (MPI) applications (a standard for message-passing libraries), and development tools with runtime libraries.

  • Right stack—Implements the full compliment of components, including the system management tools (SunMC and SunVTS software) for health monitoring and hardware testing.

NOTE

The Sun Grid Engine software is supported on the Solaris and Linux operating environments, while the other stack components are only supported on the Solaris operating environment. A wide variety of platforms, however, can be controlled by the Sun Grid Engine through the use of unsupported binaries which are available from the open-source site.

Sun Grid Engine

The SGE distributed resource management (DRM) software is the core component of the Sun Cluster Grid software stack. The SGE software provides all of the traditional DRM functions, such as batch queuing, load balancing, job accounting statistics, user-specifiable resources, suspending and resuming jobs, and cluster-wide resources. The SGE software also includes enhancements such as a batch-aware shell, Qtsch, which allows interactive applications to be used with the SGE software.

The Sun Grid Engine, Enterprise Edition (SGEEE) software delivers additional capability beyond that of the SGE software in the form of a policy module. Apart from the policy module, the SGEEE and SGE software are largely identical. The policy module lets administrators allocate a share of a compute resource to different departments and projects, and is therefore considered the DRM software of choice for an enterprise grid rather than the cluster grid. The SGEEE software is offered free in the form of open-source software called Grid Engine (GE).

There are four types of logical hosts in an SGE environment, as shown in FIGURE 3 and described in the following table. Depending on the size, complexity, and desired scalability of the cluster grid, a grid can be set up with one or two systems with multiple host roles. In fact, you can set up a grid with only one or two systems, each configured with multiple host roles.

Figure 3FIGURE 3 Hosts in a Sun Grid Engine

TABLE 1 Hosts in a Sun Grid Engine

Host

Description

Master

The host that handles all requests from users, makes job scheduling decisions, and dispatches jobs to execution hosts. There is a single master host in each SGE software implementation.

Daemons:

Schedd—Is the scheduler daemon that matches jobs in the spooling area to available hosts, depending upon job priority, job requirements, etc.

Qmaster—Accepts job requests and passes them on to the scheduler daemon, and implements the scheduling decisions made by the scheduler daemon.

Shadow master

While there is only one master host, other machines in the cluster can be designated as shadow master hosts to provide greater availability. A shadow master host continually monitors the master host, and automatically and transparently assumes control in the event that the master host fails.

Daemon:

Shadowd—Monitors the existence of the master host daemons, and arranges to take over those functions if the master host fails.

Execution

Hosts in the cluster that are available to execute jobs are called execution hosts.

Daemon:

Execd—Accepts jobs from the qmaster daemon and spawns a shepherd process to execute the job on the local machine. Reports load information back to the master daemon.

Submit

Hosts configured to submit, monitor, and administer jobs. No daemons are required on submit hosts.

Administration

Hosts used to make changes to the cluster configuration, such as changing DRM parameters, adding new nodes, or adding or changing users. No daemons are required for administration hosts.


Software Job Flow

All jobs are submitted to the SGE master and are held in a spooling area until the scheduler determines that the job is ready to run. The SGE software matches available resources to the job requirements, such as physical memory, CPU speed, and software license needs. As soon as an appropriate resource becomes available for execution of a new job, the SGE software dispatches a matching job with the highest priority. The SGE scheduler takes into account the order the job was submitted, what machines are available, and the priority of the job.

The following description and figure illustrates a typical software job flow.

  1. Job submission—When a user submits a job from a submit host, the job submission request is sent to the master host.

  2. Job scheduling—The master host determines the host to which the job will be assigned. It assesses the load, checks for licenses, and evaluates any other job requirements.

  3. Job execution—After obtaining scheduling information, the master host then sends the job to the selected execution host. The execution host saves the job in a job information database and starts a shepherd process, which starts the job, and waits for completion.

  4. Accounting information—When the job is complete, the shepherd process returns the job information, and the execution host then reports the job completion to the master host, and removes the job from the job information database. The master host updates the job accounting database to reflect job completion.

Figure 4FIGURE 4 Sun Grid Engine Software Job Flow

Sun HPC ClusterTools Software

Sun HPC ClusterTools software provides an integrated software environment for MPI applications, including additional high performance libraries (Scalapack), a parallel debugger, and the runtime environment for the MPI applications.

Sun HPC ClusterTools software is thread-safe, facilitating hybrid parallel applications that mix threaded and MPI parallelism to create applications that use MPI for communication between cooperating processes and threads within each process. Such codes can make the most efficient use of the capabilities of individual SMP nodes in the high performance cluster environment.

The Sun™ Cluster Runtime Environment (CRE) provides the execution environment necessary for launching Sun MPI parallel jobs and load balancing across a compute cluster. The CRE comprises two sets of daemons—the master daemons and the nodal daemons. These two sets of daemons work cooperatively to maintain the state of the cluster and manage program execution. The master daemons consist of the daemons tm.rdb, tm.mpmd, and tm.watchd. They run on one node exclusively, which is called the master node. There are two nodal daemons, tm.omd and tm.spmd. They run on all the nodes.

Integration with the Sun Grid Engine Software

In a production computing environment, the CRE component of Sun HPC ClusterTools software can be integrated with the SGE software to handle the details of launching and controlling Sun MPI jobs. Sun CRE provides the SGE software with all the relevant information about parallel applications in which multiple resources are reserved for a single job.

Currently, the integration of Sun HPC ClusterTools software with the SGE software is "loose". Tight integration is supported with other MPI runtime environments such as MPICH (a portable MPI implementation).

Additional Tools for the Grid

Additional software tools facilitate the installation, application development, administration, and maintenance of components in the cluster grid. Unless specified otherwise, the tools mentioned in this article are distributed with the Solaris operating environment.

Solaris JumpStart and Solaris Flash Software

Solaris JumpStart software and Solaris Flash software are tools that speed and aid the automated installation of the operating environment for Sun systems. The tools can be used in tandem to manage the installations in a cluster grid. Both Solaris JumpStart software and Solaris Flash software support the use of post-installation scripts that can be executed automatically following the install. In a cluster grid environment, these scripts can be used to mount the SGE master directories and perform OS installations.

Solaris JumpStart software is an automated installation program that installs and sets up a Solaris operating environment anywhere on the network, without any user interaction. It allows the administrator to have different custom jump start configurations based on rule sets. Systems undergoing network installs are matched to a system profile using the rules file. The rules files is a look-up table consisting of rules that define matches between system attributes and profiles. Profiles contain file system layout and installation package configuration information that is used during the installation process.

The Solaris Flash software captures a snapshot image of a system, including the Solaris operating environment, most applications, and system configuration information, using the flarcreate command (flash tool). Using this system image, administrators can replicate server configurations on to multiple (clone) servers. The Flash archive is transmitted over the network from an NFS server, or HTTP server to the installation client, and is written directly to the client's disk. After the archive is written to the disk, any necessary configuration modifications are performed.

Sun Management Center Software

SunMC software is system management software for system administrators to perform remote system management, monitor performance, and isolate hardware and software faults for Sun systems.

SunMC software has three components; console, server, and agent. The console component provides user interface in either the SunMC GUI or through a web browser. SunMC software is based on an intelligent agent-based architecture. A SunMC server monitors and controls managed entities by sending requests to agents residing on the managed nodes. Agents are software components based on simple network management protocol (SNMP) technology that collect management data on behalf of the server. Agents collect and process data locally, and can act on data to send SNMP traps and run processes. These agents can also initiate alarms, provide administrative notification, or perform specific actions based on collected data or messages through customizable rules and thresholds.

In the cluster grid environment, SunMC agents can be installed on those servers that provide critical services such as the SGE master or NFS servers, and also for the larger compute tier hosts. For thin-node compute hosts (single or dual processor), if the agent layer is not installed, the SunMC server will still report "alive status" using SNMP pings.

Sun Validation Test Suite Software

SunVTS software is a diagnostic tool that tests and validates Sun hardware by verifying the connectivity and functionality of most Sun system hardware. SunVTS software can be tailored to run on various types of machines ranging from desktops to servers, and supports testing in both 32-bit and 64-bit Solaris operating environments. Tests examine subsystems such as processors, peripherals, storage, network, memory, graphics and video, audio, and communication.

Sun VTS can be used to validate a system during development or production, and for troubleshooting, periodic maintenance, and system or subsystem stressing.

Sun ONE Studio 7, Compiler Collection

Formally known as Forte™ for High Performance Computing software, the Sun™ ONE Studio 7, Compiler Collection software is a development environment for FORTRAN, C, and C++. This software includes compilers, libraries, and a debugger, which support serial, threaded, and OpenMP applications. This software is available from http://www.sun.com.

Sun Cluster Grid Implementation Example

FIGURE 5 is a block diagram representing an example of the implementation of a Sun Cluster Grid. Each block represents a host in one of the tiers.

Figure 5FIGURE 5 Cluster Grid Implementation Example

At the access tier, one host is used to allow logins. This machine is configured as a SGE software submit host.

An administration host is used to access all hosts in the cluster grid through a serial interconnect. This machine also runs the console layer of SunMC software, and is configured as an SGE administration host, allowing administrative control of the SGE software.

Two hosts are also used at the management tier. One host runs the SGE master service and SunMC software. The other provides install, backup, and NFS services.

The compute layer consists of both Solaris and Linux operating environments in this example. The three SMP compute hosts can cater for OpenMP, and large memory serial jobs. A Solaris or Linux cluster interconnected by Myrinet is available for MPI jobs.

Of course, a vast number of alternative arrangements are valid at each tier, and full treatment of the cluster grid design and implementation will be provided in an upcoming BluePrints OnLine article entitled "Introduction to the Cluster Grid – Part 2".

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